BrainDynamics STARProtocols documentation

Content:

• Brain activity recordings
  • TrialBrainData
    • TrialBrainData.trial_nr
    • TrialBrainData.chan_nr
    • TrialBrainData.trials_len
    • TrialBrainData.samp_freq
    • TrialBrainData.samp_mat_list
    • TrialBrainData.info_dict
    • TrialBrainData.clear()
    • TrialBrainData.load()
    • TrialBrainData.load_from_files()
• Functional brain network analysis
  • Store networks & compute distributions of network properties
    • NetworkData
      • NetworkData.trial_nr
      • NetworkData.edge_nr
      • NetworkData.edgelist_arr
      • NetworkData.laglist_arr
      • NetworkData.node_nr
      • NetworkData.info_dict
      • NetworkData.clear()
      • NetworkData.compute_ew_for_Cliffs_delta()
      • NetworkData.compute_ewd()
      • NetworkData.compute_nd_for_Cliffs_delta()
      • NetworkData.compute_ndd()
      • NetworkData.compute_new_for_Cliffs_delta()
      • NetworkData.compute_newd()
      • NetworkData.extract()
      • NetworkData.get_maxabs_weights()
      • NetworkData.get_minmax_distances()
      • NetworkData.load_from_filelist()
      • NetworkData.write_to_filelist()
  • Compare distributions of network properties
    • compare_ews_Cliffs_delta()
    • compare_nds_Cliffs_delta()
    • compare_news_Cliffs_delta()
  • Sort network elements from distributions of network properties
    • sort_distribution()
  • Visualize distributions of network properties
    • plot_Cliffs_delta()
    • plot_distribution()
• Scaled cross-correlation as functional connectivity
  • CrossCorrelogram
    • CrossCorrelogram.max_shift_size
    • CrossCorrelogram.scale_size
    • CrossCorrelogram.corr_coeff_arr
    • CrossCorrelogram._interpolator
    • CrossCorrelogram._maxabs_shift
    • CrossCorrelogram._maxabs_value
    • CrossCorrelogram._maxabs_is_min
    • CrossCorrelogram.clear()
    • CrossCorrelogram.compute()
    • CrossCorrelogram.get_maxabs()
    • CrossCorrelogram.plot()